Package: motus 6.1.1

Birds Canada

motus: Fetch and use data from the Motus Wildlife Tracking System

Retrieve, filter, and visualize telemetry data from the Motus Wildlife Tracking System <https://motus.org>.

Authors:Birds Canada [aut, cre], John Brzustowski [aut], Denis Lepage [aut], Steffi LaZerte [ctb], Joey Bernard [ctb], Lucas Berrigan [ctb], Tara Crewe [ctb], Zoe Crysler [ctb], Jeremy Hussell [ctb], Catherine Jardine [ctb], Amie MacDonald [ctb], Stuart Mackenzie [ctb], Paul Morrill [ctb], Josh Sayers [ctb], Philip Taylor [ctb]

motus_6.1.1.tar.gz
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motus_6.1.1.tgz(r-4.4-any)motus_6.1.1.tgz(r-4.3-any)
motus_6.1.1.tar.gz(r-4.5-noble)motus_6.1.1.tar.gz(r-4.4-noble)
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motus.pdf |motus.html✨
motus/json (API)
NEWS

# Install 'motus' in R:
install.packages('motus', repos = c('https://birdscanada.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/motuswts/motus/issues

Pkgdown:https://motuswts.github.io

On CRAN:

batsbirdsinsectssciencetelemetrytracking

5.01 score 19 stars 108 scripts 40 exports 80 dependencies

Last updated 7 months agofrom:73fecbf7eb. Checks:OK: 1 ERROR: 6. Indexed: no.

TargetResultDate
Doc / VignettesOKDec 11 2024
R-4.5-winERRORDec 11 2024
R-4.5-linuxERRORDec 11 2024
R-4.4-winERRORDec 11 2024
R-4.4-macERRORDec 11 2024
R-4.3-winERRORDec 11 2024
R-4.3-macERRORDec 11 2024

Exports:%>%activityactivityAllcheckVersionclarifycreateRunsFilterdeleteRunsFilterdeprecateBatchesfilterByActivitygetAccessgetGPSgetMotusDBSrcgetRunsgetRunsFiltersgpsAlllistRunsFiltersmetadatamotusLogoutnodeDataplotAllTagsCoordplotAllTagsSiteplotDailySiteSumplotRouteMapplotSiteplotSiteSigplotTagSigpoints2PathsimSiteDetsiteSumsiteSumDailysiteTranssrvTimeoutsunRiseSettagmetagmeSampletagSumtagSumSitetellmetimeToSunrisetwriteRunsFilter

Dependencies:abindaskpassbitbit64blobcachemclassclassIntclicolorspacecpp11crayoncurldata.tableDBIdbplyrdplyre1071fansifarverfastmapgenericsgeosphereggplot2ggspatialgluegridExtragtablehmshttrisobandjpegjsonliteKernSmoothlabelinglatticelifecyclelubridatelutzmagrittrMASSMatrixmemoisemgcvmimemunsellnlmeopensslpillarpkgconfigplogrpngprettyunitsprogressproxypurrrR6RColorBrewerRcpprlangrosmRSQLites2scalessfspstringistringrsuncalcsystibbletidyrtidyselecttimechangeunitsutf8vctrsviridisLitewithrwk

Readme and manuals

Help Manual

Help pageTopics
Add/update batch activityactivity
Add/update all batch activityactivityAll
Check database versioncheckVersion
Report or claim ambiguous tag detectionsclarify
Create a new filter records that can be applied to runscreateRunsFilter
Delete a filterdeleteRunsFilter
Fetch and remove deprecated batchesdeprecateBatches
Filter 'alltags' by 'activity'filterByActivity
Return accessible projects and receiversgetAccess
Get GPS variablesgetGPS
Get the src_sqlite for a receiver or tag databasegetMotusDBSrc
Returns a dataframe containing runsgetRuns
Get runsFiltersgetRunsFilters
Add/update all GPS pointsgpsAll
Returns a dataframe of the filters stored in the local database.listRunsFilters
Update all metadatametadata
Fetch and use data from the Motus Wildlife Tracking Systemmotus
Forget login credentials for motus.motusLogout
Add/update nodeDatanodeData
Plot all tag detections by latitude or longitudeplotAllTagsCoord
Plot all tag detections by deploymentplotAllTagsSite
Plots number of detections and tags, daily, for a specified siteplotDailySiteSum
Map of tag routes and sites coloured by idplotRouteMap
Plot all tags by siteplotSite
Plot signal strength of all tags by a specified siteplotSiteSig
Plot signal strength of all detections for a specified tag by siteplotTagSig
Convert points to pathpoints2Path
Create a dataframe of simultaneous detections at multiple sitessimSiteDet
Summarize and plot detections of all tags by sitesiteSum
Summarize daily detections of all tags by sitesiteSumDaily
Summarize transitions between sites for each tagsiteTrans
Sets global options for timeoutssrvTimeout
Obtain sunrise and sunset timessunRiseSet
Download motus tag detections to a databasetagme
Create an in-memory copy of sample tags datatagmeSample
General summary of detections for each tagtagSum
Summarize detections of all tags by sitetagSumSite
Report how much new data motus has for a tag detection databasetellme
Obtain time to and from sunrise/sunsettimeToSunriset
Write to the local database the probabilities associated with runs for a filterwriteRunsFilter